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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015814045.1_cds_XP_016497789.1_11884
CDS Infomation

[gene=LOC107816578] [db_xref=GeneID:107816578] [protein=polygalacturonase At1g48100-like] [protein_id=XP_016497789.1] [location=complement(join(33732..34239,34519..34600,34779..34986,35066..35110,35201..35368,35456..35839))] [gbkey=CDS]
Sequence

ATGGACTTTACTAAGATTTTCTTCTTGATTTTTCATTTTATCCTGCTTTCCTTTGTTTGT
TCAGTTCATGGTAGGCTTTATGACTACCCGAACGTGCCCCGTTTTCGTGCATTGTCACAA
ATTTCATTGCCACCTTCCCCTGCACCTGAGGGTGCACCAGAAACTAACAATGGCAAGAAT
TCAAATGATTCTGCAGCCATTTTCAATGTGTTATCTTATGGTGCTGTTGGAGATGGTGTG
ACCGACGATACACAAGCGTTTAAAATGGCTTGGGATGCTGCTTGTCAAGTTGATTCAGCC
ATTGTATTAGTTCCCTATCACTATTCCTTCATGATTCAATCCACAATCTTCACTGGTCCT
TGTAAAAGTGGACTTGTTTTTCAGATTGAAGGAACCATAATGCCACCAGATGGACCTGAT
TCATGGCCAAAAGGTGTCAGTAAAAGACAATGGTTAGTCTTTTACAGAATTGATGGAATG
TCAATGCAAGGTGGTGGACTTATAGATGGCAAAGGTGAAAAATGGTGGAATCTTCCTTGC
AAACCTCACAAAGGAATAAATGGAAAAACTGTAGCTGGTCCTTGTGACAGCCCAGTGGCT
ATAAGGTTTTTCATGAGCTCAAATTTGACAGTTCAAGGACTTAAAATCAAGAACAGTCCA
TTTTTCCATTTCAGATTTGACAGTTGCCATGATGTTCACATTGATTCACTTTACATAAAA
GCACCATCTCTGAGCCCCAATACTGATGGAATTCACATAGAGAATACCAATGATGTCACT
ATACAAAATTCAATTATCTACAATGGTGATGACTGTATTTCAATTGGAGCTGGTTGTTTC
AATGTTGATATAAGGAACATGACCTGTGGTCCTAGTCATGGAATAAGCATTGGCAGCCTA
GGTATTCGCAATTCGCGGGCATGTGTATCGAACATTACAGTTACAGATTCAACTATTAAG
CATTCAGACAATGGTGTTAGGATCAAGACATGGCAAGGTGGATTTGGAGCAGTATCAAAG
GTTACTTTCAACAACATTAAAATGGAAAATGTCCGAAATCCGATAATATTAGATCAATAC
TACTGCAACAACAATAACAAGAGCTGTGCAAATCAAACTTCAGCAGTGTACATTTCTGAT
GTGATTTATTCAAACATAAAAGGAACTTATGATGTGAGAAGTCCACCAATGCGTTTGGCT
TGTAGTGATAGTGTCCCATGCACAAATTTGACTTTTGTAGATGTGGAATTATATCCAGCT
CAAGGACAGAAAATTATAGAACCATATTGTTGGAATGCTTATGGAGATCTTAGGAGTCTT
ACTATTCCGCCAGTTTTTTGCTTGTTGGAAGGCAAACCTCAGTCATTGCCAAGTAATGAT
GTTGATCAGTGTTGA

Peptide Sequence

PEP ID

XP_016497789.1
PEP Infomation

PREDICTED: polygalacturonase At1g48100-like [Nicotiana tabacum]
Sequence

MDFTKIFFLIFHFILLSFVCSVHGRLYDYPNVPRFRALSQISLPPSPAPEGAPETNNGKN
SNDSAAIFNVLSYGAVGDGVTDDTQAFKMAWDAACQVDSAIVLVPYHYSFMIQSTIFTGP
CKSGLVFQIEGTIMPPDGPDSWPKGVSKRQWLVFYRIDGMSMQGGGLIDGKGEKWWNLPC
KPHKGINGKTVAGPCDSPVAIRFFMSSNLTVQGLKIKNSPFFHFRFDSCHDVHIDSLYIK
APSLSPNTDGIHIENTNDVTIQNSIIYNGDDCISIGAGCFNVDIRNMTCGPSHGISIGSL
GIRNSRACVSNITVTDSTIKHSDNGVRIKTWQGGFGAVSKVTFNNIKMENVRNPIILDQY
YCNNNNKSCANQTSAVYISDVIYSNIKGTYDVRSPPMRLACSDSVPCTNLTFVDVELYPA
QGQKIIEPYCWNAYGDLRSLTIPPVFCLLEGKPQSLPSNDVDQC

Transcript Sequence

Gene sequence data has not been registered.